Apptainer 1.1.8 includes a patch that by default disables mounting of extfs filesystem types in setuid-root mode, while continuing to allow mounting of extfs filesystems in non-setuid "rootless" mode using fuse2fs.
Some workarounds are possible. Either do not install apptainer-suid (for versions 1.1.0 through 1.1.7) or set `allow setuid = no` in apptainer.conf (or singularity.conf for singularity versions). This requires having unprivileged user namespaces enabled and except for apptainer 1.1.x versions will disallow mounting of sif files, extfs files, and squashfs files in addition to other, less significant impacts. (Encrypted sif files are also not supported unprivileged in apptainer 1.1.x.). Alternatively, use the `limit containers` options in apptainer.conf/singularity.conf to limit sif files to trusted users, groups, and/or paths, and set `allow container extfs = no` to disallow mounting of extfs overlay files. The latter option by itself does not disallow mounting of extfs overlay partitions inside SIF files, so that's why the former options are also needed.
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